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Indian Pediatr 2016;53:623 -626 |
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Interpretation of
Rotavirus-positivity Patterns Across India
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S Venkatasubramanian, CP Girish Kumar and Sanjay
Mehendale
From National Institute of Epidemiology, Indian
Council of Medical Research, Chennai, India.
Correspondence to: Dr S Venkatasubramanian, National
Institute of Epidemiology, Indian Council of Medical Research, II Main
Road, TNHB, Ayapakkam, Chennai 600 077, India.
Email:
[email protected]
Received: June 10, 2015;
Initial review: September 26, 2015;
Accepted: May 05, 2016.
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Objective: To analyze variation in rotavirus-positivity using simple
alternative statistical measures.
Methods: Hospital-based rotavirus surveillance
among children admitted with acute gastroenteritis between 2005 and
2009. Prevalence, adjusted proportions and symmetrized index were
calculated.
Results: Rotavirus prevalence was 40% (range 37%
- 44%). Adjusted proportion analysis revealed higher level of deviation
from annual prevalence in seasons (December – February and September –
November); age groups (<12 months and 12-23 months) and regions (East
and South). Analysis of symmetrized index revealed higher estimates of
variation in all years, except in 2006.
Conclusion: Proposed statistical measures are
useful as refined measures to study extent of disease spread in
surveillance programmes, aiding evaluation of the load and pattern of
disease burden in different regions over time.
Keywords: Diarrhea, Epidemiology, Prevalence, Rotavirus
infection.
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In developing countries, rotavirus-associated
gastroenteritis is a leading cause of morbidity and mortality in early
childhood. The burden of rotavirus gastroenteritis is highest among very
young children and decreases rapidly thereafter. In temperate areas,
seasonality of rotavirus infection with a single winter peak is well
documented. In tropical climates, seasonality is less defined, with
occasional increase noticed during cold and dry periods [1, 2].
The Indian ‘National Rotavirus Surveillance Network’
(NRSN) was initiated in 2005 by the Indian Council of Medical Research
(ICMR) as a collaborative task-force study to generate nationally
representative data on rotavirus burden and its molecular epidemiology
in India. The multi-site, hospital- based surveillance has been carried
out in two rounds (Round 1: 2005-2009 and Round 2: 2012-2016). The data
from 2005-2009 has been previously analyzed to report association of
rotavirus positivity with age, gender and season as well as the
distribution of specific genotypes [3,4].
With multi-site data sets, the application of
appropriate statistical measures to more meaningfully interpret national
level data is important. Such analyses facilitate interpretation of
variations by years, by regions, by population characteristics like age
and gender, and by seasonality. These may be useful in planning and
implementing appropriate prevention and control strategies in different
parts of the country. We used two new methodological approaches namely
‘Adjusted Proportion’ and ‘Symmetrized Index’ (adjusted variation) to
assess temporal, geographical and demographical variations in disease
patterns, and have illustrated the application of these measures in the
context of rotavirus gastroenteritis in India.
Methods
In all, 6954 cases of children hospitalized with
acute gastroenteritis enrolled in NRSN Round 1 (2005-2009) for which
complete data were available have been included in this analysis.
Details of study setting, location of sites, and case recruitment in
NRSN have been published earlier [3,4]. Data was aggregated as different
age groups (<12 months, 12-23 months, 24-35 months,
³36 months), gender
(male, female), seasons (December 6 February, March 6 May, June-August
and September 6 November), and Regions (East, West, South, North) for
statistical analysis.
In addition to calculating the prevalence of
rotavirus positivity (a measure of rotavirus disease burden), to
understand the disease pattern in different regions over time and across
different groups (levels of aggregations), we calculated the following
two statistical measures:
(i) Adjusted Proportion, a ratio of two
independent binomial proportions can be considered a standardized
ratio (Details provided in Web Appendix I). Proportion of
rotavirus positive cases by average proportion of rotavirus positive
cases was calculated for in various domains / level of aggregations
viz. seasons and annual time points. Confidence Intervals
were calculated [5].
(ii) Symmetrized Index (SI), is proposed
as an indicator of variability in disease and represents the
difference between the highest and lowest prevalences adjusted for
extreme observations {[max/(max+min)] – [min/(max+ min)]}. Standard
Analysis of Variance (ANOVA) was used to assess the equality of the
proposed SI.
Results
Rotavirus prevalence for the period 2005-2009 ranged
from 37% to 44% with maximum, minimum and average rotavirus positivity
varying across the regions both annually (Web Fig. 1;
Table I) and seasons during the survey period (Table
I). The minimum rotavirus prevalence (13.8%) was observed in the
third season of 2007 and the maximum prevalence (88.9%) was observed in
first season of 2006. The annual average prevalence ranged from 36% (95%
CI 29.5- 43.6) to 44% (95% CI 39.6 – 48.9). In the Eastern region during
June-Aug of 2007, rotavirus positivity was nil and maximum prevalence of
81% was observed in September – November of 2006 (data not shown). In
the Western region, lowest prevalence of 5% was seen during June-August
of 2007 and maximum prevalence of 80% was observed in September-November
of the same year. In the Southern region, lowest and highest prevalences
were 19% (March -May) and 68% (December-February) of 2008, respectively.
In the Northern region, lowest positivity was seen in September
-November (13%) of 2008 whereas the highest prevalence was observed in
December- February (87%) of 2009 (data not shown).
TABLE I Annual and Seasonal Prevalence of Rotavirus Disease in India
India |
Year |
Max |
Min |
Prevalence (95% CI) |
SI |
Seasons |
|
(%) |
(%) |
|
|
Dec - Feb |
2006 |
88.89 |
49.35 |
55.70 (55.22-56.18) |
29 |
|
2007 |
55.64 |
51.85 |
54.61 (54.61-54.62) |
04 |
|
2008 |
68.66 |
51.42 |
59.33 (59.21-59.45) |
14 |
|
2009 |
51.87 |
41.70 |
46.21 (46.15-46.27) |
11 |
Mar-May |
2006 |
60.00 |
50.00 |
55.81 (55.77-55.85) |
09 |
|
2007 |
53.33 |
28.57 |
37.74 (37.49-37.99) |
30 |
|
2008 |
43.01 |
20.90 |
34.58 (34.38-34.78) |
35 |
|
2009 |
46.46 |
14.63 |
27.55 (27.13-27.96) |
52 |
Jun-Aug |
2006 |
38.93 |
28.66 |
32.47 (32.43-32.51) |
15 |
|
2007 |
22.96 |
13.79 |
19.16 (19.12-19.19) |
25 |
|
2008 |
30.46 |
27.57 |
28.73 (28.73-28.74) |
05 |
|
2009 |
42.75 |
42.75 |
42.75 (42.75-42.75) |
00 |
Sep-Nov |
2006 |
55.13 |
40.68 |
49.74 (49.65-49.82) |
15 |
|
2007 |
63.69 |
32.11 |
49.36 (48.95-49.77) |
33 |
|
2008 |
45.53 |
34.36 |
40.00 (39.95-40.05) |
14 |
Annual |
2006 |
60.00 |
27.14 |
44.24 (39.6-48.9) |
38 |
|
2007 |
63.69 |
13.79 |
36.56 (29.5-43.6) |
64 |
|
2008 |
68.66 |
24.00 |
39.49 (33.2-45.8) |
48 |
|
2009 |
51.87 |
22.50 |
39.07 (34.9-43.2) |
39 |
SI: symmetrized index. |
Using adjusted proportions, differences in rotavirus
positivity for various domains (annual, seasons, age group etc.)
adjusted for reference points (domain prevalence/ mean) with 95% CI are
shown in Table II. Deviation from the annual prevalence
(adjusted proportion of >1.0) was observed for the season
December-February and September – November in all the regions (Table
II). A similar phenomenon was observed for the age groups of <12
months and 12-23 months and in the Eastern and Northern regions.
TABLE II Adjusted Proportions for Rotavirus Positivity Across Domains
Levels |
Observed |
Number |
Rotavirus |
Adjusted |
|
Rotavirus |
tested |
positivity |
Proportion |
|
cases |
|
(%) |
[95% CI] |
Year |
2006 |
806 |
1822 |
44 |
1.11 [1.04 - 1.17] |
2007 |
623 |
1704 |
37 |
0.92 [0.85 - 0.98] |
2008 |
904 |
2289 |
39 |
0.99 [0.93 - 1.05] |
2009 |
445 |
1139 |
39 |
0.98 [0.9 - 1.06] |
|
Total |
2778 |
6954 |
40 |
Season |
Dec-Feb |
1079 |
1982 |
54 |
1.36 [1.3 - 1.43] |
Mar-May |
607 |
1909 |
32 |
0.8 [0.74 - 0.86] |
Jun-Aug |
476 |
1708 |
28 |
0.7 [0.64 - 0.76] |
Sep-Nov |
616 |
1355 |
45 |
1.14 [1.07 - 1.21] |
|
Total |
2778 |
6954 |
40 |
Age (m) |
<12 m |
1417 |
3352 |
42 |
1.06 [1.01 - 1.11] |
12-23 m |
1032 |
2247 |
46 |
1.15 [1.09 - 1.21] |
24-35 m |
207 |
696 |
30 |
0.74 [0.66 - 0.84] |
>=36 m |
122 |
659 |
19 |
0.46 [0.39 - 0.55] |
|
Total |
2778 |
6954 |
40 |
Gender |
Male |
1750 |
4375 |
40 |
1 [0.96 - 1.05] |
Female |
1028 |
2579 |
40 |
1 [0.94 - 1.05] |
|
Total |
2778 |
6954 |
40 |
Region |
East |
769 |
1835 |
42 |
1.05 [0.99 - 1.12] |
West |
919 |
2570 |
36 |
0.90 [0.83 - 0.94] |
South |
753 |
1678 |
45 |
1.12 [0.93 - 1.06] |
North |
337 |
871 |
39 |
0.97 [1.25 - 1.46] |
|
Total |
2778 |
6954 |
40 |
Symmetrized Index (SI) varied from 4% to 52% during
the surveillance period across regions when the rotavirus positivity was
accounted for the seasonal periodicity (Table I). For the
entire study period, the calculated estimate SI was 67%. When accounting
for annual periodicity the SI ranged from 38% to 64%, highlighting the
high rotaviral disease burden. Web Fig. 2
depicts the
annual-seasonal and regional distribution of SI. Analysis of variance
performed on SI revealed that there was no variation among SI accounting
for seasons and age of children during the study period (data not
shown).
Discussion
In the present surveillance data, although
hospitalization with rotavirus gastroenteritis occurred throughout the
year, more hospitalizations were seen during months of December to
February. Fluctuations in rotavirus disease burden can be detected and
modeled using a range of statistical tools [6]. Measurements in terms of
rates, percentages, proportions etc. can be calculated for
different regions or for domains (levels of aggregations) that are
mutually exclusive and exhaustive. Patterns become evident when such
quantitative measures are compared between various domains, but such
summarizations involve loss of information [7]. To compensate for this
loss, normalization of data or adjusting for average prevalence or
symmetrization of extreme observations in prevalence will result in
refinement in measurements [8].In the present analysis, comparison of
estimates derived by the usual prevalence measurement and the
symmetrized index revealed that symmetrization resulted in a higher
estimate of 67%. Similar increase or decrease in estimates was observed
when SI and prevalence was analyzed for different seasons and regions.
By accounting for the difference in extreme observations, the analysis
shows that the symmmetrized index will provide more realistic estimates
of rotavirus disease variability. This "folded fraction" is particularly
useful in settings where the range is large and outlier observations are
more.
The graphical depiction of prevalence in this paper
aids understanding of the distribution of the disease burden. Adjusted
proportion analysis explains the variations among differences in annual
or seasonal and other such data categorization and calculation of
confidence intervals for adjusted proportions adds value to such
estimates. This ratio reduces noise from the settings in which little or
no rotavirus was observed. It also gives an indication of greater
deviation from the average whenever this ratio is greater than one.
Usually calculation of confidence intervals is done for simple
proportions. The recent development of calculating confidence intervals
for ratio of proportions allows application of the indirect test of
significance for equality [5]. Using adjusted proportions, we have shown
that one can easily identify regions / seasons where the deviation in
rotaviral prevalence is more than the average. Therefore this measure
can be used to generate pattern of rotaviral disease in the country
showing the differences in domains over time.
In conclusion, the analysis using these newer and
simple statistical measures has potential for application in
surveillance of other major infectious diseases such as meningitis or
pneumonias wherein evaluation of the load and pattern of disease burden
in different regions over time can be carried out.
Acknowledgements: M Chiranjeevi, Technical
Assistant, NRSN project team at NIE for support in statistical analysis.
Dr Gagandeep Kang for reviewing and providing valuable inputs.
Contributors: SV: manuscript conceptualization
and development, data analysis; CPGK: concept refinement, data
interpretation and manuscript writing; SMM: concept refinement, data
interpretation and manuscript writing. All authors approved the final
manuscript.
Funding: Indian Council of Medical
Research; Competing Interests: None
What This Study Adds?
• Adjusted proportion helped in identifying
deviations from annual prevalence among regions and seasons.
• Symmetrized index provided rotavirus disease variability
estimate of 67%.
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