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Indian Pediatr 2017;54:1021-1024 |
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Carbapenem-resistant
Enterobacteriaceae in Pediatric Bloodstream Infections in
Rural Southern India
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Ramalingam Sekar, Manoharan Mythreyee,
#Seetharaman Srivani,
*Dharmaraj Sivakumaran,
Sivathanu Lallitha and Selvam Saranya
Departments of Microbiology and *Pediatrics,
Government Theni Medical College, The Tamilnadu Dr MGR Medical
University, Theni; and #Department of Microbiology, Dr ALM
Post Graduate Institute of Basic Medical Sciences, University of Madras,
Chennai; India.
Correspondence to: Dr Ramalingam Sekar, Assistant
Professor of Microbiology, Government Theni Medical College, Theni,
India.
Email: [email protected]
Received: May 23, 2016;
Initial review: August 31, 2016;
Accepted: July 17, 2017.
Published online: August 24, 2017.
PII:S097475591600079
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Objective: To measure the frequency of
antimicrobial resistance in pediatric blood culture isolates of
Escherichia coli and Klebsiella spp. with focus on carbapenem
resistance. Methods: Over a period of three years, pediatric
blood culture isolates were tested for antimicrobial susceptibility,
including molecular investigations for carbapenem resistance.
Results: Amikacin, carbapenems, colistin and tigecycline had an
antimicrobial efficacy of >70% (n=140). 7 of the 15 randomly
selected isolates were positive for carbapenemase gene; among
them, five were New Delhi Metallo
b-lactamase (NDM).
Conclusion: There was a high prevalence of Klebsiella spp. in
pediatric bacteremia and dissemination of NDM-mediated carbapenem
resistance in pediatric wards.
Keywords: Antimicrobial resistance, Blood culture, Escherichia
coli, Klebsiella spp.
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B loodstream infections (BSI)
are important causes of morbidity and mortality in children [1].
Successful outcome of these BSI depends on prompt and timely
administration of appropriate antimicrobials. Drug-resistant organisms,
especially the carbapenemase-producing strains of Escherichia coli
and Klebsiella spp. are concerning pediatric health care
providers recently [2-4].
Common causes of pediatric BSI and their
antimicrobial resistance (AMR) patterns are highly variable across
institutions [5]. Therefore, the surveillance of pathogens causing
pediatric BSI and understanding their local epidemiology of AMR is an
important prerequisite to predict empirical therapy. This study aimed to
measure the prevalence of pathogens causing BSI in pediatric population
of rural Southern India, and to measure the frequency of AMR in
E.coli and Klebsiella spp. isolates.
Methods
This cross-sectional study was conducted at a
tertiary care teaching hospital from January 2012 to December 2014.
Blood culture specimens received for bacteriological investigation from
pediatric (age 0 to 12 years) inpatients as part of their routine
patient management were included in this study. The study protocol was
approved by the Institutional Review Board of Government Theni Medical
College.
Blood culture and the identification of isolate was
performed as per the standard procedure [6]. The culture was considered
contaminated when any of the following organisms was identified:
Micrococcus spp., viridans streptococci, Bacillus spp., and
diphtheroids [7].
Antimicrobial susceptibility test was performed by
Kirby-Bauer disk diffusion method (zone of inhibition) by following
Clinical and Laboratory Standards Institute (CLSI) guidelines [8]. For
colistin ( ³11
mm) and tigecycline (>18 mm), alternative susceptibility breakpoints
were used, as these were not available from CLSI [9,10].
During the study period, randomly selected ertapenem
(ETP) non-susceptible isolates were tested for Minimum Inhibitory
Concentration (MIC) of carbapenems (ETP, imipenem, meropenem, and
doripenem by agar dilution method) [8], and for the carriage of
carbapenemase encoding genes (CEG) such as blaNDM (New Delhi
Metallo b-lactamase),
blaKPC (Klebsiella pneumoniae Carbapenemase), blaOXA-48
(Oxacillinase), blaVIM (Verona Integron-encoded Metallo
b-lactamase)
and blaIMP (Imipenemase) by multiplex PCR using previously
published primers [11]. Isolates not susceptible to any of the
carbapenems other than ETP by MIC was defined as Carbapenem-resistant
Enterobacteriaceae (CRE) [12].
Frequency of AMR was calculated by WHONET software
and statistical analysis was performed with Chi-square test and the
difference was considered significant when P value was less than 0.05.
Results
A total of 1932 pediatric patients were tested by
blood culture during the study period. Among them, 880 (45.5%) were
positive with true pathogen (Table I), of which 38 and 102
isolates were identified as E. coli and Klebsiella spp.,
respectively. Contaminants were identified in 316 (16.4%) of blood
culture specimens.
TABLE I Culture Isolates From Pediatric Bloodstream Infections (N=880)
Organism |
No. of isolates (%) |
Gram Positive Bacteria |
Staphylococcus aureus |
77 (8.8) |
Staphylococcus , Coagulase Negative |
333 (37.8) |
Streptococcus spp. |
10 (1.1) |
Enterococcus spp. |
67 (7.6) |
Gram Negative Bacteria |
Escherichia coli |
38 (4.3) |
Klebsiella pneumoniae |
98 (11.1) |
Klebsiella oxytoca |
4 (0.5) |
Proteus mirabilis |
10 (1.1) |
Proteus vulgaris |
4 (0.5) |
Enterobacter spp. |
9 (1.0) |
Citrobacter spp. |
18 (2.1) |
Morganella spp. |
2 (0.2) |
Providencia spp. |
3 (0.3) |
Hafnia spp. |
5 (0.6) |
Serratia spp. |
2 (0.2) |
Salmonella spp. |
15 (1.7) |
Shigella spp. |
2 (0.2) |
Pseudomonas aeruginosa |
21 (2.4) |
Non-fermenting Gram-negative bacilli |
121 (13.8) |
Gram-negative cocci/coccobacilli |
12 (1.4) |
Fungi |
Candida spp. |
29 (3.3) |
The cumulative antimicrobial susceptibility data
revealed high proportion of resistance in both E. coli and
Klebsiella spp. to the most of the antibiotics tested (Table
II). Amikacin, carbapenems, colistin and tigecycline had an
antimicrobial efficacy of >70%. When compared with E. coli, the
resistance rate in Klebsiella spp. was higher to most of the
antibiotics; specifically, significant difference was observed with
piperacillin, cefazolin, cefuroxime, ceftazidime, aztreonam, gentamicin,
and colistin. However, the resistance rate to fluoroquinolones,
doxycycline, cefoxitin, cefepime, and piperacillin/tazobactam were lower
in Klebsiella spp. than E. coli among which the
significant difference was only observed with cefoxitin.
TABLE II In Vitro Activity of Antimicrobial Agents Against Pediatric Blood Culture Isolates of E. Coli and Klebsiella Spp.
Antimicrobial name |
E. coli (n=38) |
Klebsiella spp. (n=102) |
P value* |
|
%R (95% CI) |
%R (95% CI) |
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Ampicillin |
90.6 (73.8-97.5) |
94.9 (88.0-98.1) |
0.75 |
Piperacillin |
60 (36.4-80.0) |
89.6 (79.1-95.4) |
<0.01 |
Amoxicillin/Clavulanic acid |
73.9 (51.3-88.9) |
84.9 (75.2-91.4) |
0.07 |
Piperacillin/Tazobactam |
31.2 (16.7-50.1) |
27.5 (18.9-38.0) |
0.47 |
Cefazolin |
82.1 (62.4-93.2) |
96.6 (89.6-99.1) |
<0.01 |
Cefuroxime |
61.5 (40.7-79.1) |
88.2 (78.9-93.9) |
<0.01 |
Ceftazidime |
69.7 (51.1-83.8) |
82 (72.8-88.7) |
<0.01 |
Cefotaxime |
71.4 (51.1-86.0) |
92.4 (84.5-96.6) |
0.05 |
Cefepime |
51.7 (32.9-70.1) |
38.6 (28.6-49.6) |
0.16 |
Cefoxitin |
46.2 (20.4-73.9) |
21.2 (11.6-35.1) |
<0.01 |
Aztreonam |
59.4 (40.8-75.8) |
71 (60.5-79.7) |
0.04 |
Doripenem |
10 (0.5-45.9) |
14.3 (6.0-29.2) |
0.34 |
Ertapenem |
13.3 (4.3-31.6) |
22.4 (14.8-32.2) |
0.14 |
Imipenem |
11.1 (2.9-30.3) |
11.5 (6.0-20.6) |
0.76 |
Meropenem |
10 (0.5-45.9) |
16.3 (7.3-31.3) |
0.18 |
Amikacin |
21.2 (9.6-39.4) |
24 (16.3-33.8) |
0.61 |
Gentamicin |
30 (15.4-49.6) |
66 (55.4-75.3) |
<0.01 |
Nalidixic acid |
48.4 (30.6-66.6) |
59.8 (48.7-70.0) |
0.31 |
Ciprofloxacin |
42.4 (25.9-60.6) |
39.8 (30.2-50.2) |
0.66 |
Gemifloxacin |
43.3 (25.9-62.3) |
38.2 (28.3-49.1) |
0.58 |
Levofloxacin |
30 (15.4-49.6) |
20 (12.6-30.0) |
0.2 |
Ofloxacin |
32.3 (17.4-51.5) |
27 (18.8-37.0) |
0.16 |
Trimethoprim/Sulfamethoxazole |
71 (51.8-85.1) |
78.1 (68.3-85.6) |
0.23 |
Colistin |
0 (0-28.3) |
8.6 (3.2-19.7) |
<0.01 |
Doxycycline |
36 (18.7-57.4) |
19.3 (12.0-29.4) |
0.12 |
Tetracycline |
56.7 (37.7-74.1) |
65.6 (55.0-74.9) |
0.5 |
Tigecycline |
0 (0.0-25.3) |
1.6 (0.1-9.9) |
0.15 |
*For difference in proportion of resistance. |
Thirty-one isolates (24 K. pneumoniae and
7 E. coli) were not susceptible to ETP; among them, randomly
selected 15 isolates (13 K. pneumoniae and 2 E. coli) were
further tested. Nine were CRE and seven were CEG positive (5 of them had
NDM, one of which also had KPC; further, one each were KPC and VIM;
intriguingly, three of these isolates are not CRE). Further, among the
nine CRE isolates, only four were CEG positive (3 NDM, and 1 NDM + KPC),
and remaining five isolates may be resistant by other mechanisms not
tested in this study. Interestingly, among the six non-CRE isolates,
three were found positive for CEG (one each for NDM, KPC, and VIM).
Among these 15 cases, nine were successfully treated
(2 were NDM, 1 was NDM + KPC and 1 was VIM positive; 5 were CEG
negative), and three patients died (two were preterm with low birth
weight, NDM positive; and third was full term with asphyxia/respiratory
failure, CEG negative); and in remaining three, outcome could not be
assessed. None of these 15 isolates was pan-drug resistant; notably,
13/15 (86.7%) isolates were susceptible to colistin and all of them were
susceptible to tigecycline.
Discussion
We documented significantly higher proportion of
Klebsiella when compared with E. coli as the cause of BSI. The
most effective antibiotic (E. coli and Klebsiella spp.
combined) in the study was colistin (92.8%), followed by tigecycline
(89.3%). Carbapenems (>77%) were sufficiently effective for the
consideration of empirical therapy for Gram-negative bacterial sepsis
[13]. Further, this report documents the emergence of CRE in pediatric
wards in rural Southern India; also, substantiates that the presence of
CEG need not confer clinical resistance to carbapenem. Thus, the testing
of MIC is more important than the detection of CEG in terms of patient
management [14].
Limitation of the study was that it was done at
single center, which may not reflect the overall picture in India;
however, it may be useful to forecast the prevalence of resistance in
rural or similar resource-limited settings. Additionally, most patients
were referred for blood culture only after the failure of empiric
therapy, which might have prejudiced the high resistance rate observed
in this study.
In conclusion, the present study documented the
higher prevalence of Klebsiella spp. in pediatric BSI and
emergence of CRE; this necessitates the strengthening of infection
control measures and effective antibiotic policy to contain their spread
in pediatric wards.
Acknowledgements: Dr. Padma Krishnan, University
of Madras, and Dr. Sulagna Basu, National Institute of Cholera and
Enteric Diseases, India for their kind contribution of control bacterial
strains for the optimization of PCR.
Contributions: RS and S Srivani: Concept,
study design, data analysis and manuscript preparation; MM: Designed the
study, and provided critical inputs to manuscript; DS and SL:
Acquisition of data, analysis and interpretation of data; S Saranya:
Laboratory testing, data collection and documentation.
Funding: Partly supported by an ad-hoc research
grant offered by Indian Council of Medical Research (grant number
5/3/3/21/2012-ECD-1); Competing interests: None stated.
What This Study Adds?
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There is emergence of
NDM-producing Carbapenem-resistance Enterobacteriaceae in
pediatric bloodstream infections.
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